Ultrasensitive profiling of >300 plasma proteins for predicting biological age (HUPO 2024 & BoAC 2024)

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Abstract

Biological aging underlies almost all major chronic diseases such as cancer, autoimmune diseases and Alzheimer’s disease. Elucidating the biological mechanisms of aging and monitoring the aging process noninvasively holds great promise for the early detection and ultimately the prevention of aging-related diseases. Current approaches to quantify biological age have mostly focused on epigenetic changes in the genome. Advances in proteomic technologies can provide an alternative and arguably more actionable measure of biological aging at the protein level. Here we apply the recently developed Nucleic acid-linked immunosandwich assay (NULISA)1 to measure >300 proteins to assess age-related changes in plasma protein levels. 

In this study, we profiled a cohort of 500 individuals spanning over 7 decades of chronological age from a biobank maintained by a major metropolitan academic medical center. The cohort consisted of an even balance of male and female subjects and is generally representative of the racial/ethnic distribution of the collection site. Plasma samples from this cohort were assayed with the NULISAseq 250-plex Inflammation and 120-plex CNS Disease Panels targeting key inflammation-related cytokines and chemokines and proteins involved in all major hallmarks of neurodegeneration such as pTau and β-amyloid proteins.

Overall target detectability in plasma samples from this cohort was 98.8% with the Inflammation Panel and 96.8% with the CNS Disease Panel. Preliminary bioinformatics analyses identified >150 targets from the Inflammation Panel that were increased with age including proinflammatory markers such as IL6, TNFα, LIF, TGFβ and IL18. Analysis with the CNS markers further identified age-dependent increases in pTau-217, pTau-181, pTau-231, Aβs (38, 40 and 42) as well as NEFL and NEFH among many other markers implicated in neurodegeneration. Additional analyses are planned to build a protein-based age predictor and assess its correlation with clinical outcomes to predict mortality and common diseases.

In conclusion, this study applied the recently developed NULISA platform to profile key inflammation and neurodegeneration-related proteins in plasma in a well curated clinical cohort. The large number of proteins identified to be associated with age indicates that this dataset may provide a rich and high-quality dataset for the aging research community.

Authors & Affiliations

Xiao-Jun Ma1*, Niyati Jhaveri1, Li Wang1, Aparna Sahajan1, Karl Garcia1, Tsz Tam1, Sean Kim1, Henry Huang1, Jesse Poganik2, Mahdi Moqri2, Dane Gobel3, Seth Paulson3, Vadim N. Gladyshev2, Dwight Kuo1, Bingqing Zhang1, Yuling Luo1

1Alamar Biosciences, Inc., Fremont, CA 94538; 2Division of Genetics, Department of Medicine, Brigham and Women’s Hospital, Harvard Medical School, Boston, MA 02115; 3Methuselah Foundation, Springfield, VA 22153

Steve Williams, MD, PhD

CSO

Dr. Willams serves as the company’s Chief Scientific Officer. He was previously Chief Medical Officer at Standard Biotools and at SomaLogic where he pioneered the discipline for discovery and validation of predictive, diagnostic and prognostic models using machine-learning applied to large-plex proteomics. 20 such tests were used for drug characterization, safety and efficacy when incorporated in clinical drug trials at Pharma/Biotech and 17 different multivariate tests were validated and translated into regulated healthcare uses. Prior to SomaLogic, Dr. Williams was at Pfizer in the UK and the USA as a clinical triallist in Translational Medicine, and subsequently as VP, Global Clinical Technology. He sat on the National Advisory Council for the National Institute of Biomedical Imaging and Bioengineering, the Executive Committee for the FNIH Biomarkers Consortium, and worked with FDA and PhRMA on developing evidentiary standards for biomarker qualification. Dr. William’s medical training was in London, at Charing Cross and Westminster Medical School, followed by a PhD in medicine/physiology at the same institution and training in Radiology at the University of Newcastle Upon Tyne. Steve is co-inventor on 26 proteomics patents and author/coauthor on multiple foundational proteomics manuscripts.

Justin McAnear

CFO

Mr. McAnear serves as the company’s Chief Financial Officer. He brings over 25 years of operational and financial leadership experience across various sectors and was instrumental in taking 10x Genomics public in 2019, serving as its CFO for over five years. Mr. McAnear served for over 3 years as Tesla’s VP of Worldwide Finance and Operations, supporting landmark initiatives such as the Model X and Model 3 launches and Solar City acquisition.  He also held various roles at Apple and J&J earlier in his career and served as a naval officer and aviator for over 9 years.