Dementia etiology classification using NULISA plasma biomarkers and machine learning

Topic/Product:
CNS Disease Panel 120, Neurology
Disease Area:
Alzheimer's Disease
Sample Type:
Plasma

Abstract

INTRODUCTION Accurate antemortem differentiation among dementia etiologies remains challenging, particularly for atypical or mixed clinical presentations. Multiplexed plasma proteomics paired with supervised machine-learning offers a minimally invasive and accessible approach for differential diagnosis.

METHODS Plasma from 194 participants was analyzed using the NULISA CNS 120+ plasma biomarker panel. Differentially abundant protein patterns associated with AD, frontotemporal lobar degeneration, Lewy body disease, and vascular disease were identified. These features were used to train supervised XGBoost classifier models. Models were then applied to participants with mild cognitive impairment to generate data-driven predictions of etiology.

RESULTS NULISA plasma biomarkers revealed disease-specific protein patterns. XGBoost classifiers differentiated disease etiologies with high specificity. Application of the models to participants with mild cognitive impairment yielded robust etiologic predictions.

DISCUSSION These results support the feasibility of using multiplexed NULISA plasma proteomics, combined with machine learning, for differential diagnosis of complex neurodegenerative dementia etiologies.

Highlights

  • Multiplex plasma proteomics revealed distinct protein markers of dementia subtypes

  • Supervised XGBoost classifiers accurately distinguished each dementia etiology

  • Model application to unknown etiologies produced interpretable probability profiles

  • The combined NULISA-machine learning framework demonstrates diagnostic feasibility

Authors & Affiliations

Kelly N. DuBois¹², Subhamoy Pal², Amanda Cook Maher²³, Judith Heidebrink²⁴, Carol Persad³, Bruno M. Giordani²³, Benjamin M. Hampstead²⁵⁶, Kelly M. Bakulski², David G. Morgan¹²⁷, and Nicholas M. Kanaan¹²⁷*

¹ Department of Translational Science and Molecular Medicine, College of Human Medicine, Michigan State University, Grand Rapids, MI, USA
² Michigan Alzheimer’s Disease Research Center, University of Michigan, Ann Arbor, MI, USA
³ Department of Psychiatry, University of Michigan, Ann Arbor, MI, USA
⁴ Department of Neurology, University of Michigan, Ann Arbor, MI, USA
⁵ Research Program on Cognition and Neuromodulation Based Interventions (RP-CNBI), Departments of Psychiatry & Neurology, University of Michigan, Ann Arbor, MI, USA
⁶ VA Ann Arbor Healthcare System, Neuropsychology Section, Mental Health Service, Ann Arbor, MI, USA
⁷ Neuroscience Program, Michigan State University, East Lansing, MI, USA

Steve Williams, MD, PhD

CSO

Dr. Willams serves as the company’s Chief Scientific Officer. He was previously Chief Medical Officer at Standard Biotools and at SomaLogic where he pioneered the discipline for discovery and validation of predictive, diagnostic and prognostic models using machine-learning applied to large-plex proteomics. 20 such tests were used for drug characterization, safety and efficacy when incorporated in clinical drug trials at Pharma/Biotech and 17 different multivariate tests were validated and translated into regulated healthcare uses. Prior to SomaLogic, Dr. Williams was at Pfizer in the UK and the USA as a clinical triallist in Translational Medicine, and subsequently as VP, Global Clinical Technology. He sat on the National Advisory Council for the National Institute of Biomedical Imaging and Bioengineering, the Executive Committee for the FNIH Biomarkers Consortium, and worked with FDA and PhRMA on developing evidentiary standards for biomarker qualification. Dr. William’s medical training was in London, at Charing Cross and Westminster Medical School, followed by a PhD in medicine/physiology at the same institution and training in Radiology at the University of Newcastle Upon Tyne. Steve is co-inventor on 26 proteomics patents and author/coauthor on multiple foundational proteomics manuscripts.

Justin McAnear

CFO

Mr. McAnear serves as the company’s Chief Financial Officer. He brings over 25 years of operational and financial leadership experience across various sectors and was instrumental in taking 10x Genomics public in 2019, serving as its CFO for over five years. Mr. McAnear served for over 3 years as Tesla’s VP of Worldwide Finance and Operations, supporting landmark initiatives such as the Model X and Model 3 launches and Solar City acquisition.  He also held various roles at Apple and J&J earlier in his career and served as a naval officer and aviator for over 9 years.