Large-scale plasma proteomics uncovers preclinical molecular signatures of Parkinson’s disease and overlap with other neurodegenerative disorders

Product:
CNS Disease Panel 120
Topic:
Neurology
Disease Area:
Parkinson's Disease
Sample Type:
Plasma
Topic/Product:
CNS Disease Panel 120
Disease Area:
Parkinson's Disease
Sample Type:
Plasma

Abstract

Parkinson’s disease (PD) remains incurable, with a long preclinical phase currently undetectable by existing methods. In the largest proteomic study in neurodegenerative diseases to date, we analyzed blood samples from ∼74,000 individuals across discovery and validation cohorts. In the EPIC4PD discovery case-cohort, large-scale profiling of 7,285 proteins (SomaScan-7K) in 4,538 initially unaffected participants (574 incident cases) identified 17 proteins that predict PD up to 28 years before diagnosis. Additional proteins revealed sex-specific effects and time-dependent effect trajectories, capturing disease progression before symptom onset. Replication in three prospective cohorts (n=64,856; 1,034 incident cases) confirmed at least 12 key pre-diagnostic biomarkers with strong evidence, including TPPP2, HPGDS, ALPL, MFAP5, OGFR, ACAD8, TCL1A, GPC4, GSTA3, LCN2, KRAS, and GJA1. Preclinical biomarkers showed 86% concordant effect directions in independent prevalent PD cases (n=2,592; p=1.6×10−19). Furthermore, in the longitudinal Tracking PD cohort (n=794), HPGDS and MFAP5 also predicted cognitive decline. Notably, several of the identified PD biomarkers overlapped with those for incident Alzheimer’s disease and amyotrophic lateral sclerosis, indicating shared molecular signatures. A machine learning-derived protein score improved PD risk prediction in external validation. This extensive proteomics effort identified novel, actionable biomarkers opening new avenues for early PD risk stratification and precision medicine.

Authors & Affiliations

Jan Homann¹, Alexander G. Smith²*, Sarah Morgan³*, Elisabet A. Frick⁴⁵*, Fangyu Liu⁶*, Vivian Viallon⁷*, Rashmi Maurya⁸, Roxanna Korologou-Linden⁹, Valerija Dobricic¹⁰, Olena Ohlei¹, Laura Deecke¹, Fatema Hajizadah³, Yujia Zhao¹¹, Fanny Artaud¹², Karl Smith-Byrne¹³, P. Martijn Kolijn¹¹, Jose Maria Huerta¹⁴¹⁵, Nils Winter¹⁶, Marcela Guevara¹⁵¹⁷¹⁸, Ana Jimenez-Zabala¹⁹²⁰, María José Sánchez¹⁵²¹²², Camino Trobajo-Sanmartín¹⁵¹⁷¹⁸, Natalia Cabrera-Castro¹⁴¹⁵, Ana Vinagre¹⁹²³, Dafina Petrova¹⁵²¹²²²⁴, Sabina Sieri²⁵, Tim J. Key¹³, Nick Wareham²⁶, Rudolph Kaaks²⁷, Ruth C. Travis¹³, Tim Hahn¹⁶, Susan Baker⁹, Sean M. Kelly²⁸, Roel Vermeulen¹¹²⁹, Susan Peters¹¹, Giovanna Masala³⁰, Carlotta Sacerdote³¹, Nancy Finkel³², The Global Neurodegeneration Proteomics Consortium (GNPC)$, Alexis Elbaz¹², Moritz Hess³³, Verena Katzke²⁶, Lars Bertram¹⁰, Vilmundur Gudnason⁴⁵, Oliver Robinson²⁹, Honglei Chen³⁴, Lefkos Middleton⁹, Laura M. Winchester⁸, Ioanna Tzoulaki², Valborg Gudmundsdottir⁴⁵, Keenan A. Walker³⁵, Pietro Ferrari⁷, Elio Riboli², Marc J. Gunter², and Christina M. Lill¹⁹

¹ Institute of Epidemiology and Social Medicine, University of Münster, Münster, Germany
² Department of Epidemiology and Biostatistics, School of Public Health, Imperial College London, London, UK
³ Centre for Neuroscience, Surgery and Trauma, Blizard Institute, Queen Mary University of London, London, UK
⁴ Icelandic Heart Association, Kopavogur, Iceland
⁵ Faculty of Medicine, Department of Health Sciences, University of Iceland, Reykjavik, Iceland
⁶ Laboratory of Behavioral Neuroscience, National Institute on Aging, Baltimore, MD, USA
⁷ International Agency for Research on Cancer (IARC/WHO), Nutrition and Metabolism Branch, Lyon, France
⁸ Department of Psychiatry, University of Oxford, Oxford, UK
⁹ Ageing and Epidemiology Unit (AGE), School of Public Health, Imperial College London, London, UK
¹⁰ Lübeck Interdisciplinary Platform for Genome Analytics (LIGA), University of Lübeck, Lübeck, Germany
¹¹ Institute for Risk Assessment Sciences, Utrecht University, Utrecht, The Netherlands
¹² Université Paris-Saclay, UVSQ, Inserm, Gustave Roussy, CESP, Villejuif, France
¹³ Cancer Epidemiology Unit, Nuffield Department of Population Health, University of Oxford, Oxford, UK
¹⁴ Department of Epidemiology, Murcia Regional Health Council, Biomedical Research Institute of Murcia-IMIB, Murcia, Spain
¹⁵ Centro de Investigación Biomédica en Red de Epidemiología y Salud Pública (CIBERESP), Madrid, Spain
¹⁶ Institute of Translational Psychiatry, University of Münster, Münster, Germany
¹⁷ Instituto de Salud Pública y Laboral de Navarra, Pamplona, Spain
¹⁸ Navarre Institute for Health Research (IdiSNA), Pamplona, Spain
¹⁹ Biogipuzkoa Health Research Institute, San Sebastian, Gipuzkoa, Spain
²⁰ Ministry of Health of the Basque Government, Sub-Directorate for Public Health and Addictions of Gipuzkoa, San Sebastián, Gipuzkoa, Spain
²¹ Escuela Andaluza de Salud Pública (EASP), Granada, Spain
²² Instituto de Investigación Biosanitaria ibs.GRANADA, Granada, Spain
²³ Osakidetza Basque Health Service, Donostia University Hospital, Neurology Department, San Sebastián, Gipuzkoa, Spain
²⁴ Servicio de Oncología Médica, Hospital Universitario Virgen de las Nieves, Granada, Spain
²⁵ Epidemiology and Prevention Unit, Fondazione IRCCS Istituto Nazionale dei Tumori di Milano, Milan, Italy
²⁶ Medical Research Council Epidemiology Unit, University of Cambridge, Cambridge, UK
²⁷ Division of Cancer Epidemiology, German Cancer Research Center, Heidelberg, Germany
²⁸ NYU Langone Health, Department of Neurology, New York, NY, USA
²⁹ University Medical Centre Utrecht, Utrecht, The Netherlands
³⁰ Clinical Epidemiology Unit, Institute for Cancer Research, Prevention and Clinical Network (ISPRO), Florence, Italy
³¹ Department of Health Sciences, University of Eastern Piedmont, Novara, Italy
³² Novartis, Cambridge, MA, USA
³³ Institute of Medical Biometry and Statistics, Faculty of Medicine and Medical Center, University of Freiburg, Freiburg, Germany
³⁴ Department of Epidemiology and Biostatistics, Michigan State University, East Lansing, MI, USA
³⁵ Laboratory of Behavioral Neuroscience, National Institute on Aging, Baltimore, MD, USA

Steve Williams, MD, PhD

CSO

Dr. Willams serves as the company’s Chief Scientific Officer. He was previously Chief Medical Officer at Standard Biotools and at SomaLogic where he pioneered the discipline for discovery and validation of predictive, diagnostic and prognostic models using machine-learning applied to large-plex proteomics. 20 such tests were used for drug characterization, safety and efficacy when incorporated in clinical drug trials at Pharma/Biotech and 17 different multivariate tests were validated and translated into regulated healthcare uses. Prior to SomaLogic, Dr. Williams was at Pfizer in the UK and the USA as a clinical triallist in Translational Medicine, and subsequently as VP, Global Clinical Technology. He sat on the National Advisory Council for the National Institute of Biomedical Imaging and Bioengineering, the Executive Committee for the FNIH Biomarkers Consortium, and worked with FDA and PhRMA on developing evidentiary standards for biomarker qualification. Dr. William’s medical training was in London, at Charing Cross and Westminster Medical School, followed by a PhD in medicine/physiology at the same institution and training in Radiology at the University of Newcastle Upon Tyne. Steve is co-inventor on 26 proteomics patents and author/coauthor on multiple foundational proteomics manuscripts.

Justin McAnear

CFO

Mr. McAnear serves as the company’s Chief Financial Officer. He brings over 25 years of operational and financial leadership experience across various sectors and was instrumental in taking 10x Genomics public in 2019, serving as its CFO for over five years. Mr. McAnear served for over 3 years as Tesla’s VP of Worldwide Finance and Operations, supporting landmark initiatives such as the Model X and Model 3 launches and Solar City acquisition.  He also held various roles at Apple and J&J earlier in his career and served as a naval officer and aviator for over 9 years.